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» On numbers of Davenport-Schinzel sequences
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BMCBI
2008
145views more  BMCBI 2008»
15 years 1 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
BMCBI
2010
122views more  BMCBI 2010»
15 years 1 months ago
Simultaneous prediction of transcription factor binding sites in a group of prokaryotic genomes
Background: Our current understanding of transcription factor binding sites (TFBSs) in sequenced prokaryotic genomes is very limited due to the lack of an accurate and efficient c...
Shaoqiang Zhang, Shan Li, Phuc T. Pham, Zhengchang...
96
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BMCBI
2008
86views more  BMCBI 2008»
15 years 1 months ago
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Ernesto Picardi, Carla Quagliariello
78
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CORR
2010
Springer
65views Education» more  CORR 2010»
15 years 1 months ago
On Unconditionally Secure Computation with Vanishing Communication Cost
We propose a novel distortion-theoretic approach to a secure three-party computation problem. Alice and Bob have deterministic sequences, and Charlie wishes to compute a normalize...
Ye Wang, Shantanu Rane, Wei Sun, Prakash Ishwar
ALMOB
2006
155views more  ALMOB 2006»
15 years 1 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg