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BMCBI
2004
76views more  BMCBI 2004»
9 years 1 months ago
VisANT: an online visualization and analysis tool for biological interaction data
Background: New techniques for determining relationships between biomolecules of all types
Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLi...
BMCBI
2004
79views more  BMCBI 2004»
9 years 1 months ago
Modeling of cell signaling pathways in macrophages by semantic networks
Michael Hsing, Joel L. Bellenson, Conor Shankey, A...
BMCBI
2004
146views more  BMCBI 2004»
9 years 1 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt
BMCBI
2004
126views more  BMCBI 2004»
9 years 1 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
BMCBI
2004
98views more  BMCBI 2004»
9 years 1 months ago
STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes
Background: The integration of many aspects of protein/DNA structure analysis is an important requirement for software products in general area of structural bioinformatics. In fa...
Roberto H. Higa, Roberto C. Togawa, Arnaldo J. Mon...
BMCBI
2004
96views more  BMCBI 2004»
9 years 1 months ago
A hybrid clustering approach to recognition of protein families in 114 microbial genomes
Background: Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function). Standar...
Timothy J. Harlow, J. Peter Gogarten, Mark A. Raga...
BMCBI
2004
162views more  BMCBI 2004»
9 years 1 months ago
Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
Background: Modern developmental biology relies heavily on the analysis of embryonic gene expression patterns. Investigators manually inspect hundreds or thousands of expression p...
Rajalakshmi Gurunathan, Bernard Van Emden, Sethura...
BMCBI
2004
211views more  BMCBI 2004»
9 years 1 months ago
GenomeViz: visualizing microbial genomes
Background: An increasing number of microbial genomes are being sequenced and deposited in public databases. In addition, several closely related strains are also being sequenced ...
Rohit Ghai, Torsten Hain, Trinad Chakraborty
BMCBI
2004
131views more  BMCBI 2004»
9 years 1 months ago
Alternative mapping of probes to genes for Affymetrix chips
Background: Short oligonucleotide arrays have several probes measuring the expression level of each target transcript. Therefore the selection of probes is a key component for the...
Laurent Gautier, Morten Møller, Lennart Fri...
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