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152
Voted
BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
15 years 2 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio
89
Voted
BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
15 years 1 months ago
GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and Specificity
  The  latest  developments  in  DNA  sequencing  tech­  niques paved the way for tremendous increase in bio­  logical databases. Once the whole DNA sequen...
M. A. Lijo Anto, G. Gopakumar, Achuthsankar S. Nai...
85
Voted
BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
15 years 2 months ago
Fast Structured Motif Search in DNA Sequences
We study the problem of structured motif search in DNA sequences. This is a fundamental task in bioinformatics which contributes to better understanding of genome characteristics a...
Mihail Halachev, Nematollaah Shiri
BIRD
2008
Springer
163views Bioinformatics» more  BIRD 2008»
15 years 2 months ago
Multi-functional Protein Clustering in PPI Networks
Abstract. Protein-Protein Interaction (PPI) networks contain valuable information for the isolation of groups of proteins that participate in the same biological function. Many pro...
Clara Pizzuti, Simona E. Rombo
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
15 years 2 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
Bioinformatics
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