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96
Voted
CPM
2009
Springer
207views Combinatorics» more  CPM 2009»
15 years 4 months ago
An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings
We present a new efficient algorithm for exact matching in encoded DNA sequences and on binary strings. Our algorithm combines a multi-pattern version of the Bndm algorithm and a s...
Simone Faro, Thierry Lecroq
131
Voted
CPM
2009
Springer
189views Combinatorics» more  CPM 2009»
15 years 7 months ago
Average-Case Analysis of Perfect Sorting by Reversals
A sequence of reversals that takes a signed permutation to the identity is perfect if it preserves all common intervals between the permutation and the identity. The problem of com...
Mathilde Bouvel, Cedric Chauve, Marni Mishna, Domi...
147
Voted
CPM
2009
Springer
183views Combinatorics» more  CPM 2009»
14 years 10 months ago
Permuted Longest-Common-Prefix Array
The longest-common-prefix (LCP) array is an adjunct to the suffix array that allows many string processing problems to be solved in optimal time and space. Its construction is a bo...
Juha Kärkkäinen, Giovanni Manzini, Simon...
182
Voted
COCOON
2009
Springer
14 years 10 months ago
An FPTAS for the Minimum Total Weighted Tardiness Problem with a Fixed Number of Distinct Due Dates
Given a sequencing of jobs on a single machine, each one with a weight, processing time, and a due date, the tardiness of a job is the time needed for its completion beyond its du...
George Karakostas, Stavros G. Kolliopoulos, Jing W...
Combinatorics
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