182
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CMSB
16 years 3 days ago
2004 Springer 
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
179
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CMSB
16 years 3 days ago
2004 Springer
Abstract. The Systems Biology Markup Language (SBML) is an XMLbased exchange format for computational models of biochemical networks. SBML Level 2, whose definition was establishe...
177
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CMSB
15 years 10 months ago
2004 Springer
We propose a robust estimation method of gene networks based on microarray gene expression data. It is well-known that microarray data contain a large amount of noise and some outl...
171
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CMSB
16 years 3 days ago
2004 Springer 
In this paper we present a methodology to estimate rates of enzymatic reactions in metabolic pathways. Our methodology is based on applying stochastic logic learning in ensemble le...
165
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CMSB
16 years 3 days ago
2004 Springer
We introduce a family of process calculi with dynamic nested membranes. In contrast to related calculi, including some developed for biological applications, active entities here a...
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Applied Computing